miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159766800|gb|EG377648.1|EG377648 GCATTTTTTTTTTTTTTTTTTGACATGTTTGCTCACAGAGACTTGTAACCACTTTAAAACATTTCAAGAGATTCTTATGT
GTGACTAAAGTACTCATCCCGTGAATTTTATGACTAGTGTGCGTTTCTATAAAAATTGATACAACTGAGATGGGAAGGGC
TTACTAAGTACTCCCTCCGTCCGGAAATACTTGTCGGAGGAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCC
ATTTTTATCCATTTCTCCGACAAGTATTTTCGGACGGAGGGAGTAGTAACTACAATATATGAATACTAGAGATCAAAGAA
ATGATAGGCTATTTTTTCCTGTTGAATGTCCTTATTTCTGCCAGGCAGTGAAATCAAATTACTCCTCTGTTTTAAATAGC
ACTCCAACCATTCTCCACATTCACTTGTGCCTTCCTCATGGTCCATGCGCTGAGCTGTGGCACCCTGACCGTGGCACTTC
CATTGTTGAAGGCATACATGTGGGCCCTGCCGACGTCGGCGAGCACCGCCGGATAAACTCTAGACGTGATGCAAACCCTA
CCCCCGCCGCCGAAGCTCTCCACCGCCGACCGATCAATCAGAGTTCTGAGGGATATCTTCCTTTCCTTTGCAAGATCAAA
TTCAAAGAAGCCTCCATAGGCTGGTTTCTCCAGTCCTGGTCTCATGGAAGACCTTCTTAGATCAGAGCACATTAGTACCA
TGTACTTTTCCTGTAACTTGTNNACTCTGAAATACACCTCAGTGTGCCGACAGCAACGG




Most similar to sp|B6DXP5|1FEH_LEYCH

>>sp|Q9Y0H3|RS19_MYXGL 40S ribosomal protein S19 OS=Myxine glutinosa
           GN=rps19 PE=2 SV=1
          Length = 145

 Score = 99.8 bits (247), Expect(2) = 4e-21
 Identities = 49/120 (40%), Positives = 76/120 (63%)
 Frame = -3

Query: 741 SAHLKRSGKMEXPGVVNMSKNSKVQGASTF*C*L*LHXAAWMXRKIYLRQGIGIGGFQKX 562
           +A  K+SGK++ P  V+  K  K +  + F         A + R +Y+R G+G+G   K 
Sbjct: 19  AAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKI 78

Query: 561 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 382
           YGGRQRNG+RP H+ + S  V+R +LQ L+ + +++ DP GGR +TS G+RD+D++AG V
Sbjct: 79  YGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQV 138



 Score = 23.5 bits (49), Expect(2) = 4e-21
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 784 TVKEVNPHEFVKA 746
           TVK+VN  EFVKA
Sbjct: 5   TVKDVNQQEFVKA 17


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|B6DXP5|1FEH_LEYCH Fructan 1-exohydrolase OS=Leymus chinensis
           GN=1-FEH PE=2 SV=1
          Length = 600

 Score =  250 bits (638), Expect = 9e-66
 Identities = 125/130 (96%), Positives = 125/130 (96%)
 Frame = -2

Query: 766 HTEVYFRVXKLQEKYMVLMCSDLRRSSMRPGLEKPAYGGFFEFDLAKERKISLRTLIDRS 587
           HTEVYFRV KLQEKYMVLMCSDLRRSSMRP LEKPAYGGFFEFDLAKERKISLRTLIDRS
Sbjct: 471 HTEVYFRVYKLQEKYMVLMCSDLRRSSMRPDLEKPAYGGFFEFDLAKERKISLRTLIDRS 530

Query: 586 AVESFGGGGRVCITSRVYPAVLADVGRAHMYAFNNGSATVRVPQLSAWTMRKAQVNVENG 407
           AVESFGGGGRVCITSRVYPAVLADVGRAHMYAFNNGSATVRVPQLSAWTMRKAQVNVE G
Sbjct: 531 AVESFGGGGRVCITSRVYPAVLADVGRAHMYAFNNGSATVRVPQLSAWTMRKAQVNVEKG 590

Query: 406 WSAI*NRGVI 377
           WSAI NRG I
Sbjct: 591 WSAIQNRGSI 600